/*******************************************************************************
 * Copyright 2012 Chao Zhang
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *   http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 ******************************************************************************/

package org.jbiolib.ncbi.genbank;

import java.util.ArrayList;
import org.jbiolib.ncbi.NCBIReference;

/**
 * @author Chao Zhang
 * @version 1.0 2012-11-06
 */

public class NCBIGenBank {

    private String locus = "";
    private int length = 0;
    private String moleculeType = "";
    private String division = "";
    private String topology = "";
    private String modifydate = "";
    private String definition = "";
    private String accession = "";
    private String version = "";
    private String gi = "";
    private String keywords = "";
    private String source = "";
    private String organism = "";
    private String organTaxonomy = "";
    private ArrayList<NCBIReference> referenceList;
    private NCBIGenBankFeaturesBasic featuresBasicInfo;
    private NCBIGenBankFeaturesRepeat featuresRepeatInfo;
    private ArrayList<NCBIGenBankFeaturesCDS> featuresCDSInfo;
    private String orgin = "";

    public NCBIGenBank() {
    }

    public void setAccession(String accession) {
        this.accession = accession;
    }

    public void setDefinition(String definition) {
        this.definition = definition;
    }

    public void setDivision(String division) {
        this.division = division;
    }

    public void setFeaturesBasicInfo(NCBIGenBankFeaturesBasic featuresBasicInfo) {
        this.featuresBasicInfo = featuresBasicInfo;
    }

    public void setFeaturesCDSInfo(ArrayList<NCBIGenBankFeaturesCDS> featuresCDSInfo) {
        this.featuresCDSInfo = featuresCDSInfo;
    }

    public void setFeaturesRepeatInfo(NCBIGenBankFeaturesRepeat featuresRepeatInfo) {
        this.featuresRepeatInfo = featuresRepeatInfo;
    }

    public void setGi(String gi) {
        this.gi = gi;
    }

    public void setKeywords(String keywords) {
        this.keywords = keywords;
    }

    public void setLength(int length) {
        this.length = length;
    }

    public void setLocus(String locus) {
        this.locus = locus;
    }

    public void setModifydate(String modifydate) {
        this.modifydate = modifydate;
    }

    public void setMoleculeType(String moleculeType) {
        this.moleculeType = moleculeType;
    }

    public void setOrganTaxonomy(String organTaxonomy) {
        this.organTaxonomy = organTaxonomy;
    }

    public void setOrganism(String organism) {
        this.organism = organism;
    }

    public void setOrgin(String orgin) {
        this.orgin = orgin;
    }

    public void setReferenceList(ArrayList<NCBIReference> referenceList) {
        this.referenceList = referenceList;
    }

    public void setSource(String source) {
        this.source = source;
    }

    public void setTopology(String topology) {
        this.topology = topology;
    }

    public void setVersion(String version) {
        this.version = version;
    }

    public String getAccession() {
        return accession;
    }

    public String getDefinition() {
        return definition;
    }

    public String getDivision() {
        return division;
    }

    public NCBIGenBankFeaturesBasic getFeaturesBasicInfo() {
        return featuresBasicInfo;
    }

    public ArrayList<NCBIGenBankFeaturesCDS> getFeaturesCDSInfo() {
        return featuresCDSInfo;
    }

    public NCBIGenBankFeaturesRepeat getFeaturesRepeatInfo() {
        return featuresRepeatInfo;
    }

    public String getGi() {
        return gi;
    }

    public String getKeywords() {
        return keywords;
    }

    public int getLength() {
        return length;
    }

    public String getLocus() {
        return locus;
    }

    public String getModifydate() {
        return modifydate;
    }

    public String getMoleculeType() {
        return moleculeType;
    }

    public String getOrganTaxonomy() {
        return organTaxonomy;
    }

    public String getOrganism() {
        return organism;
    }

    public String getOrgin() {
        return orgin;
    }

    public ArrayList<NCBIReference> getReferenceList() {
        return referenceList;
    }

    public String getSource() {
        return source;
    }

    public String getTopology() {
        return topology;
    }

    public String getVersion() {
        return version;
    }
}
